Selected etiopathogenetic aspects of autism spectrum disorders: focus on gut dysfunction and microRNAs

GASTROENTEROLOGY AND DIETOLOGY

Keywords:
autism spectrum disorders autism genome gut microbiota intestinal permeability disorder microRNA расстройства аутистического спектра аутизм геном микробиота кишечника нарушение проницаемости кишечника микроРНК

Abstract

Autism spectrum disorders are neurodevelopmental disorders characterized by abnormalities in social interaction, communication, and stereotypical, repetitive behaviors. These qualitative abnormalities are common features of an individual’s functioning in all situations and can vary significantly in severity. The global prevalence of autism spectrum disorders at the end of 2021 was 0.6%. According to statistics from the Russian State Psychiatric Service, more than 36,000 people were registered with autism in 2019, representing 2.5 individuals per 10,000 population, or 1 in 4,000 people. Most studies on the epidemiology of autism spectrum disorders report significantly higher prevalence figures. The basis for research into the etiology of autism spectrum disorders is to identify the specificity of the underlying conditions in relation to the presenting symptoms of the disease. Due to the heterogeneity of genotypic variants and phenotypic manifestations, researchers face numerous challenges and are unable to draw uniform conclusions. The purpose of this review is to review and analyze data on the etiopathogenesis of autism spectrum disorders to improve our understanding of the pathophysiology of the disease. We have identified objectives to achieve this goal. In the first stage, a comprehensive search of the e LIBRARY, Pub Med, Scopus, and Web of Science databases was conducted for articles published between 2010 and 2025. The review included original studies, systematic reviews, and meta-analyses published in Russian and English. In the second stage, 99 articles containing information on the genetic structure, environmental factors, and other analyzed aspects of autism spectrum disorders were selected and analyzed. Finally, the authors concluded that further research on the nature of autism spectrum disorders is warranted and that the most promising research directions are identified. An information-analytical method was used to write this literature review.

Author Biographies

Elena V. Loshkova, Siberian State Medical University; Medical Genetic Research Center named after Academician N.P. Bochkov; Children’s City Hospital No. 1

Dr. Sci. (Med.), Associate Professor, Professor of the Department of Hospital Pediatrics, Siberian State Medical University; Leading Researcher, Medical Genetic Research Center Named after Academician N.P. Bochkov;Leading Research Fellow, Children’s City Hospital No. 1

Zainutdinkhuzha F. ugli Sayfitdinkhuzhaev, Siberian State Medical University; City Clinical Hospital No. 1

Ph D Candidate in the Department of Neurology and Neurosurgery, Siberian State Medical University; intern in the Department of Neurology at the City Clinical Hospital No. 1 of the Ministry
of Health of Republic of Uzbekistan

Elena V. Romanova, Siberian State Medical University

Cand. Sci. (Med.), Associate Professor,Department of Microbiology and Virology

Marina V. Fedosova, Siberian State Medical University

5thyear student in the Faculty of Pediatrics

Anastasia A. Khatkevich, Siberian State Medical University

Assistant Professor, Department of Pediatrics with a Course in Endocrinology

Andrey L. Solnyshko, Siberian State Medical University; Children’s City Hospital No. 1

Cand. Sci. (Med.), Associate Professor, Department of Anesthesiology, Resuscitation, and Intensive Care, Siberian State Medical University; Chief Physician, Children’s Hospital No. 1

Aleksandr V. Budkin, Children’s City Hospital No. 1; Regional specialized orphanage for children with organic lesions of the central nervous system and mental disorders

pediatrician, Palliative Care Department, RegionalspecializedChildren’s Home; pediatrician, Children’s Hospital No. 1

Elena A. Balakireva, Belgorod State National Research University

Dr. Sci. (Med.), Associate Professor, Head of the Department of Pediatrics

Olga V. Voronkova, Siberian State Medical University

Dr. Sci. (Med.), Professor, Head of the Department of Biology and Genetics

Alena V. Zaitseva, Siberian State Medical University

1styear Resident, Department of Dermatovenereology

Svetlana V. Samarina, Siberian State Medical University

Cand. Sci. (Med.), Associate Professor of the Department of Pediatrics with Endocrinology Course

Anatoly I. Khavkin, Scientific Research Clinical Institute of Childhood of the Ministry of Health of the Moscow Region; Belgorod State National Research University

Dr. Sci. (Med.), Professor, Director of the A.V. Mazurin Moscow Regional Center for Pediatric Gastroenterology and Hepatology, Research Clinical Institute of Childhood, Ministry of Health of the Moscow Region; Professor of the Department of Pediatrics, Medical Institute, Belgorod State National Research University

Dilorom A. Nurmatova, City Clinical Hospital No. 1

Ph D, Cand. Sci. (Med.), Associate Professor, Head of the Neurology Department, City Clinical Hospital No. 1, Ministry of Health of Republic of Uzbekistan

References

1. Расстройства аутистического спектра. Клинические рекомендации МЗ РФ. Ассоциация психиатров и психологов за научно обоснованную практику; Союз педиатров России. 2024. URL: https://diseases.medelement.com/disease/расстройства-аутистического-спектра-кр-рф-2024/18165 (дата обращения: 29.02.2026).

2. Andreo-Martínez P., Rubio-Aparicio M., Sánchez-Meca J., Veas A., Martínez-González A.E. A meta-analysis of gut microbiota in children with autism. J Autism Dev Disord. 2022;52(3):1374–1387. https://doi.org/10.1007/s10803-021-05002-y.

3. Bleuler E. Dementia praecox: oder Gruppe der Schizophrenien. Deuticke, Leipzig; 1911.

4. Sucharewa G.E. Die schizoiden Psychopathien im Kindesalter. Part 1 of 2. Eur Neurol. 1926;60(3–4):235–247. https://doi.org/10.1159/000190478.

5. Kanner L. Autistic disturbances of affective contact. Nerv Child. 1943;2(3):217–250.

6. Asperger H. Die “Autistischen psychopathen” im kindesalter. Arch Psychiatr Nervenkr. 1944;117(1):76–136. https://doi.org/10.1007/BF01837709.

7. Vicedo M. Moving beyond the search for the first discoverer of autism. Front Psychiatry. 2024;15:1266486. https://doi.org/10.3389/fpsyt.2024.1266486.

8. Rosen N.E., Lord C., Volkmar F.R. The diagnosis of autism: from Kanner to DSM-III to DSM-5 and beyond. J Autism Dev Disord. 2021;51(12):4253–4270. https://doi.org/10.1007/s10803-021-04904-1.

9. Masi A., De Mayo M.M., Glozier N., Guastella A.J. An overview of autism spectrum disorder, heterogeneity and treatment options. Neurosci Bull. 2017;33(2):183–193. https://doi.org/10.1007/s12264-017-0100-y.

10. Irwin J.K., Mac Sween J., Kerns K.A. History and evolution of the autism spectrum disorders. In: Matson L., Sturmey P., eds. International handbook of autism and pervasive developmental disorders. Autism and child psychopathology series. NY: Springer New York; 2011. P. 3–16. https://doi.org/10.1007/978-1-4419-8065-6_1.

11. Shaw K.A. Maenner, Prevalence and Early Identification of Autism Spectrum Disorder Among Children Aged 4 and 8 Years — Autism and Developmental Disabilities Monitoring Network, 16 Sites, United States, 2022. MMWR. Surveill Summ. 2025;74(2):1–22. https://doi.org/10.15585/mmwr.ss7402a1.

12. Salari N., Rasoulpoor S., Rasoulpoor S., Shohaimi S., Jafarpour S., Abdoli N. et al. The global prevalence of autism spectrum disorder: a comprehensive systematic review and meta-analysis. Ital J Pediatr. 2022;48(1):112. https://doi.org/10.1186/s13052-022-01310-w.

13. Varia J., Herbert M., Hooker B. The neuroimmunology of autism. Mol Neurobiol. 2025;63(1):316. https://doi.org/10.1007/s12035-025-05589-8.

14. Hassan M.M., Mokhtar H.M.O. Investigating autism etiology and heterogeneity by decision tree algorithm. Inform Med Unlocked. 2019;16:100215. https://doi.org/10.1016/j.imu.2019.100215.

15. Satterstrom F.K., Kosmicki J.A., Wang J., Breen M.S., De Rubeis S., An J.Y. et al. Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism. Cell. 2020;180(3):568–584.e23. https://doi.org/10.1016/j.cell.2019.12.036.

16. Grove J., Ripke S., Als T. D., Mattheisen M., Walters R.K. et al. Identification of common genetic risk variants for autism spectrum disorder. Nat Genet. 2019;51(3):431–444. https://doi.org/10.1038/s41588-019-0344-8.

17. Wu S., Wu F., Ding Y., Hou J., Bi J., Zhang Z. Advanced parental age and autism risk in children: a systematic review and meta-analysis. Acta Psychiatr Scand. 2017;135(1):29–41. https://doi.org/10.1111/acps.12666.

18. Martini M.I., Merkelbach I., Begeer S. Gestational age in autistic children and adolescents: prevalence and effects on autism phenotype. J Autism Dev Disord. 2023;53(5):1906–1914. https://doi.org/10.1007/s10803-022-05466-6.

19. Sim M.A., Shen L., Ti L.K., Sng B.L., Broekman B.F.P., Daniel L.M., Bong C.L.; GUSTO study group. Association between maternal labour epidural analgesia and autistic traits in offspring. J Clin Anesth. 2023;89:111162. https://doi.org/10.1016/j.jclinane.2023.111162.

20. Wang Z., Chan A.Y.L., Coghill D., Ip P., Lau W.C.Y., Simonoff E. et al. Association between prenatal exposure to antipsychotics and attention-deficit/hyperactivity disorder, autism spectrum disorder, preterm birth, and small for gestational age. JAMA Intern Med. 2021;181(10):1332–1340. https://doi.org/10.1001/jamainternmed.2021.4571.

21. Amnuaylojaroen T., Parasin N., Saokaew S. Exploring the association between early-life air pollution exposure and autism spectrum disorders in children: A systematic review and meta-analysis. Reprod Toxicol. 2024;125: 108582. https://doi.org/10.1016/j.reprotox.2024.108582.

22. Ding M., Shi S., Qie S., Li J., Xi X. Association between heavy metals exposure (cadmium, lead, arsenic, mercury) and child autistic disorder: a systematic review and meta-analysis. Front Pediatr. 2023;11:1169733. https://doi.org/10.3389/fped.2023.1169733.

23. Gil-Hernández F., Gómez-Fernández A.R., la Torre-Aguilar M.J., Pérez-Navero J.L., Flores-Rojas K., Martín-Borreguero P., Gil-Campos M. Neurotoxicity by mercury is not associated with autism spectrum disorders in Spanish children. Ital J Pediatr. 2020;46(1):19. https://doi.org/10.1186/s13052-020-0780-1.

24. Quan J., Panaccione N., Jeong J., Underwood F., Coward S., Windsor J. et al. Association between celiac disease and autism spectrum disorder: a systematic review. J Pediatr Gastroenterol Nutr. 2021;72(5):704–711. https://doi.org/10.1097/mpg.000000000000305.

25. Malekpour M., Parhizkar M., Golabi F., Thompson R., Zakwani M.A., Soleymanjahi S., Chohedri E. Exploring the shared genetic basis between autism spectrum disorder and gastrointestinal disorders: a bioinformatic study. Sci Rep. 2025;15(1):30086. https://doi.org/10.1038/s41598-025-15476-w.

26. Leader G., Abberton C., Cunningham S., Gilmartin K., Grudzien M., Higgins E. et al. Gastrointestinal symptoms in autism spectrum disorder: a systematic review. Nutrients. 2022;14(7):1471. https://doi.org/10.3390/nu14071471.

27. Sonbol H.M., Abdelmawgoud A.S., El-Kady N.M., Abdelhay E.S., Abdel Tawab H.E. Serum zonulin level in autistic children and its relation to severity of symptoms a case-control study. Sci Rep. 2025;15(1):27802. https://doi.org/10.1038/s41598-025-11420-0.

28. Бавыкина И.А. Значение коррекции питания в терапии расстройств аутистического спектра у детей. Лечащий врач. 2019;(8):45–47. EDN: JPCBQW.

29. Чагай В.В. Коррекция питания и пищевого поведения при лечении аутизма у детей. Российский педиатрический журнал. 2025;28(1S):103–103. EDN: BUSEXA.

30. Дмитриева Ю.А., Захарова И.Н., Радченко Е.Р., Дорошина Е.А. Безглютеновая диета при неврологических и психиатрических заболеваниях: стоит ли ожидать эффекта? Экспериментальная и клиническая гастроэнтерология. 2021;188(4):170–177. https://doi.org/10.31146/1682-8658-ecg-188-4-170-177.

31. Croall I.D., Hoggard N., Hadjivassiliou M. Gluten and autism spectrum disorder. Nutrients. 2021;13(2):572. https://doi.org/10.3390/nu13020572.

32. Di Stasio L., Mamone G. Gluten Proteins: beneficial factors and toxic triggers in human health. Foods. 2025;14(19): 3403. https://doi.org/10.3390/foods14193403.

33. Quan J., Panaccione N., Jeong J., Underwood F.E., Coward S., Windsor J.W. et al. Association between celiac disease and autism spectrum disorder: a systematic review. J Pediatr Gastroenterol Nutr. 2021;72(5):704–711. https://doi.org/10.1097/MPG.0000000000003051.

34. Zochowska-Sobaniec M., Jarocka-Cyrta E., Lotowska J.M., Sobaniec P. Effects of a gluten-free diet on brain bioelectrical activity and neurological symptoms in children with celiac disease: a study using EEG assessment. J Clin Med. 2025;14(3):725. https://doi.org/10.3390/jcm14030725.

35. Quan L., Xu X., Cui Y., Han H., Hendren R.L., Zhao L., You X. A systematic review and meta-analysis of the benefits of a gluten-free diet and/or casein-free diet for children with autism spectrum disorder. Nutr Rev. 2022;80(5):1237–1246. https://doi.org/10.1093/nutrit/nuab073.

36. Keller A., Rimestad M.L., Friis Rohde J., Holm Petersen B., Bruun Korfitsen C., Tarp S. The effect of a combined gluten- and casein-free diet on children and adolescents with autism spectrum disorders: a systematic review and meta-analysis. Nutrients. 2021;13(2):470. https://doi.org/10.3390/nu13020470.

37. Alamri E.S. Efficacy of gluten- and casein-free diets on autism spectrum disorders in children. Saudi Med J. 2020;41(10):1041–1046. https://doi.org/10.15537/smj.2020.10.25308.

38. Biagioli V., Matera M., Cavecchia I., Di Pierro F., Zerbinati N., Striano P. Gut microbiota and autism: unlocking connections. Nutrients. 2025;17(23):3706. https://doi.org/10.3390/nu17233706.

39. Янкина Г.Н., Лошкова Е.В., Кондратьева Е.И., Желев В.А., Михалев Е.В. Коморбидность при целиакии. Педиатрия. Журнал им. Г.Н. Сперанского. 2017;96(6):140–149. https://doi.org/10.24110/0031-403X-2017-96-6-140-149.

40. Янкина Г.Н., Кондратьева Е.И., Лошкова Е.В., Терентьева А.А. Особенности диагностики и лечения различных форм непереносимости белка пшеницы. Вопросы детской диетологии. 2017;15(1):13–24. https://doi.org/10.20953/1727-5784-2017-1-13-24.

41. Бавыкина И.А., Попов В.И., Звягин А.А., Бавыкин Д.В. Частота выявления маркеров непереносимости казеина и глютена у детей с расстройствами аутистического спектра. Вопросы питания. 2019;88(4):41–47. https://doi.org/10.24411/0042-8833-2019-10040.

42. Бавыкина И.А., Попов В.И., Звягин А.А., Бавыкин Д.В. Глиадоморфин, казоморфин и интестинальный белок, связывающий жирные кислоты, у детей с расстройствами аутистического спектра. Вопросы питания. 2021;90(3):20–27. https://doi.org/10.33029/0042-8833-2021-90-3-20-27.

43. Бавыкина И.А. Особенности физического развития и уровня нутриентов у детей с расстройствами аутистического спектра. Российский медико-биологический вестник имени академика И.П. Павлова. 2019;27(2):181–187. https://doi.org/10.23888/PAVLOVJ2019272181-187.

44. Звягин А.А., Бавыкина И.А. Использование диетологических подходов в лечении расстройств аутистического спектра у детей. Педиатрия. Журнал им. Г.Н. Сперанского. 2019;98(6):171–176. https://doi.org/10.24110/0031-403X-2019-98-6-171-176.

45. Чагай В.В. Значимость нарушений микробиоты кишечника и коррекции питания в лечении аутизма у детей. Российский педиатрический журнал. 2025;28(2S):69. EDN: LVNLVP.

46. Благонравова А.С., Галова Е.А., Широкова И.Ю., Галова Д.А. Ось «кишечник-мозг» — результаты клинического исследования. Экспериментальная и клиническая гастроэнтерология. 2023;14(6):45–52. https://doi.org/10.31146/1682-8658-ecg-214-6-5-13.

47. Филиппова Ю.Ю., Русакова К.А., Никитина А.С., Бурмистрова А.Л. Изменения микробиоты тонкой кишки детей с аутизмом, принимавших и не принимавших пробиотики. Российский педиатрический журнал. 2025;28(S 4):75. EDN: ZSXIGC.

48. Tao X., Li Z., Wang D., Pu J., Liu Y., Gui S. et al. Perturbations in gut microbiota in autism spectrum disorder: A systematic review. Front Neurosci. 2025;19:1448478. https://doi.org/10.3389/fnins.2025.1448478.

49. Osama A., Anwar A.M., Ezzeldin S., Ahmed E.A., Mahgoub S., Ibrahim O. et al. Integrative multi-omics analysis of autism spectrum disorder reveals unique microbial macromolecules interactions. J Adv Res. 2025;77:265–279. https://doi.org/10.1016/j.jare.2025.01.036.

50. Mazzone L., Dooling S.W., Volpe E., Uljarević M., Waters J.L., Sabatini A. et al. Precision microbial intervention improves social behavior but not autism severity: A pilot double-blind randomized placebo-controlled trial. Cell Host Microbe. 2024;32(1):106–116.e6. https://doi.org/10.1016/j.chom.2023.11.021.

51. Ha S., Oh D., Lee S., Park J., Ahn J., Choi S., Cheon K.A. Altered gut microbiota in korean children with autism spectrum disorders. Nutrients. 2021;13(10):3300. https://doi.org/10.3390/nu13103300.

52. Agarwala S., Naik B., Ramachandra N.B. Mucosa-associated specific bacterial species disrupt the intestinal epithelial barrier in the autism phenome. Brain Behav Immun Health. 2021;15:100269. https://doi.org/10.1016/j.bbih.2021.100269.

53. Huang M., Liu K., Wei Z., Feng Z., Chen J., Yang J. et al. Serum oxytocin level correlates with gut microbiome dysbiosis in children with autism spectrum disorder. Front Neurosci. 2021;15:721884. https://doi.org/10.3389/fnins.2021.721884.

54. Yap C.X., Henders A.K., Alvares G.A., Wood D.L.A., Krause L., Tyson G.W. et al. Autism-related dietary preferences mediate autism-gut microbiome associations. Cell. 2021;184(24):5916–5931.e17. https://doi.org/10.1016/j.cell.2021.10.015.

55. Tomova A., Soltys K., Kemenyova P., Karhanek M., Babinska K. The influence of food intake specificity in children with autism on gut microbiota. Int J Mol Sci. 2020;21(8):2797. https://doi.org/10.3390/ijms21082797.

56. Wong O.W.H., Lam A.M.W., Or B.P.N., Mo F.Y.M., Shea C.K.S., Lai K.Y.C. et al. Disentangling the relationship of gut microbiota, functional gastrointestinal disorders and autism: a case-control study on prepubertal Chinese boys. Sci Rep. 2022;12(1):10659. https://doi.org/10.1038/s41598-022-14785-8.

57. Piwowarczyk A., Horvath A., Pisula E., Kawa R., Szajewska H. Gluten-free diet in children with autism spectrum disorders: a randomized, controlled, single-blinded trial. J Autism Dev Disord. 2020;50(2):482–490. https://doi.org/10.1007/s10803-019-04266-9.

58. West K.A., Yin X., Rutherford E.M., Wee B., Choi J., Chrisman B.S. et al. Multi-angle meta-analysis of the gut microbiome in Autism Spectrum Disorder: a step toward understanding patient subgroups. Sci Rep. 2022;12(1):17034. https://doi.org/10.1038/s41598-022-21327-9.

59. O’Brien J., Hayder H., Zayed Y., Peng C. Overview of Micro RNA Biogenesis, Mechanisms of Actions, and Circulation. Front Endocrinol. 2018;9:402. https://doi.org/10.3389/fendo.2018.00402.

60. Rajman M., Schratt G. Micro RNAs in neural development: From master regulators to fine-tuners. Development. 2017;144(13):2310–2322. https://doi.org/10.1242/dev.144337.

61. Garrido-Torres N., Guzmán-Torres K., García-Cerro S., Bermúdez G.P., Cruz-Baquero C., Ochoa H. et al. mi RNAs as biomarkers of autism spectrum disorder: A systematic review and meta-analysis. Eur Child Adolesc Psychiatry. 2023;33(9):2957–2990. https://doi.org/10.1007/s00787-023-02138-3.

62. Stott J., Wright T., Holmes J., Wilson J., Griffiths-Jones S., Foster D., Wright B. A systematic review of non-coding RNA genes with differential expression profiles associated with autism spectrum disorders. PLo S ONE. 2023;18(6):e0287131. https://doi.org/10.1371/journal.pone.0287131.

63. Ozkul Y., Taheri S., Bayram K.K., Sener E.F., Mehmetbeyoglu E., Öztop D.B. et al. A heritable profile of six mi RNAs in autistic patients and mouse models. Sci Rep. 2020;10(1):9011. https://doi.org/10.1038/s41598-020-65847-8.

64. Wang Y., Chen Z.-P., Hu H., Lei J., Zhou Z., Yao B. et al. Sperm micro RNAs confer depression susceptibility to offspring. Sci Adv. 2021;7(7):eabd7605. https://doi.org/10.1126/sciadv.abd7605.

65. Tyebji S., Hannan A.J., Tonkin C.J. Pathogenic infection in male mice changes sperm small RNA profiles and transgenerationally alters offspring behavior. Cell Rep. 2020;31(4):107573. https://doi.org/10.1016/j.celrep.2020.107573.

66. Acerbi da Silva L.N., Stumpp T. Bioinformatic analysis of autism-related mi RNAs and their Po Tential as biomarkers for autism epigenetic inheritance. Genes (Basel). 2025;16(4):418. https://doi.org/10.3390/genes16040418.

67. Bellido-Cuéllar S., de la Fuente R.P., Lezana-Rosales J.M., Sánchez-Calvín M.T., Saiz-Díaz R.A., de la Aleja J.G. Epilepsy and Autism spectrum disorder caused by a pathogenic variant in TNRC6B. Seizure Eur J Epilepsy. 2023;110:117–118. https://doi.org/10.1016/j.seizure.2023.06.008.

68. Granadillo J.L., Stegmann A.P., Guo H., Xia K., Angle B., Bontempo K. et al. Pathogenic variants in TNRC6B cause a genetic disorder characterised by developmental delay/intellectual disability and a spectrum of neurobehavioural phenotypes including autism and ADHD. J Med Genet. 2020;57(10):717. https://doi.org/10.1136/jmedgenet-2019-106470.

69. Алексеева А.С., Филиппова Ю.Ю., Бурмистрова А.Л. Профили экспрессии микро РНК в лейкоцитах крови как маркеры тяжести расстройств аутистического спектра у детей. Вестник Пермского университета. Серия Биология. 2024;(3):335–343. https://doi.org/10.17072/1994-9952-2024-3-335-343.